neo-domain

ectopic_interactions2.yaml

trackc:
  - ax: t7
    height: 1.25
    track_type: hicmap
    track_para:
      mat:
        method: extractContactRegions
        clr: ./github/seqyuan/trackc_data/examples/BxPC3.chr18.mcool::/resolutions/25000
        balance: False
        row_regions:
          - 18:47400000-48280000
          - 18:75280000-74030000
      mapC:
        map_type: tri
        label: neo tad
        cmap: PuBu
        height: 40
        ax_on: False
        maxrange: 200
        minrange: 10

  - ax: t8
    height: 0.5
    track_type: bw_track
    track_para:
      bw: ./github/seqyuan/trackc_data/examples/GSM3178671_BxPC3_H3K27ac.bigwig
      regions:
        - 18:47400000-48280000
        - 18:75280000-74030000
      label: H3K27ac
      binsize: 2000
      color:
       - '#5B7695'
  - ax: t6
    height: 0.4
    track_type: multi_scale_track
    track_para:
      regions:
        - 18:47400000-48280000
        - 18:75280000-74030000
      scale_adjust: Mb
      intervals: 2
      tick_fontsize: 7

  - ax: t9
    height: 2.8
    track_type: gene_track
    track_para:
      bed12: ./github/seqyuan/trackc_data/examples/hg19_chr18.gene.bed12
      regions:
        - 18:47400000-48280000
        - 18:75280000-74030000
      line: 12
      gene_fontsize: 8

trackc cli ectopic_interactions2.yaml -s 5,1