extract ectopic interactions regions#
ectopic_interactions3.yaml
trackc:
- ax: t7
height: 4
track_type: hicmap
track_para:
mat:
method: extractCisContact
clr: ./github/seqyuan/trackc_data/examples/BxPC3.chr18.mcool::/resolutions/50000
region: 18:45000000-78077248
mat2:
method: extractContactRegions
clr: ./github/seqyuan/trackc_data/examples/BxPC3.chr18.mcool::/resolutions/25000
balance: False
row_regions:
- 18:47340000-50370000
- 18:61140000-63630000
- 18:74030000-77560000
mapC:
map_type: squ
label:
- ectopic interactions(50k)
- zoomin(25k)
cmap:
- PuBu
- Reds
maxrange:
- 70
- 100
ax_on: True
- ax: t7
track_type: scale_track
track_para:
region: 18:45000000-78077248
scale_adjust: Mb
tick_pos: top
ratio2ax: 0.15
space: 0.01
tick_fontsize: 6
label_fontsize: 7
- ax: t1
height: 0.4
track_type: multi_scale_track
track_para:
regions:
- 18:47340000-50370000
- 18:61140000-63630000
- 18:74030000-77560000
scale_adjust: Mb
intervals: 2
tick_fontsize: 7
trackc cli ectopic_interactions3.yaml -s 4,1