extract ectopic interactions regions#

ectopic_interactions3.yaml

trackc:
  - ax: t7
    height: 4
    track_type: hicmap
    track_para:
      mat:
        method: extractCisContact
        clr: ./github/seqyuan/trackc_data/examples/BxPC3.chr18.mcool::/resolutions/50000
        region: 18:45000000-78077248
      mat2:
        method: extractContactRegions
        clr: ./github/seqyuan/trackc_data/examples/BxPC3.chr18.mcool::/resolutions/25000
        balance: False
        row_regions:
          - 18:47340000-50370000
          - 18:61140000-63630000
          - 18:74030000-77560000
      mapC:
        map_type: squ
        label:
          - ectopic interactions(50k)
          - zoomin(25k)
        cmap:
          - PuBu
          - Reds
        maxrange:
          - 70
          - 100
        ax_on: True
  - ax: t7
    track_type: scale_track
    track_para:
      region: 18:45000000-78077248
      scale_adjust: Mb
      tick_pos: top
      ratio2ax: 0.15
      space: 0.01
      tick_fontsize: 6
      label_fontsize: 7
  - ax: t1
    height: 0.4
    track_type: multi_scale_track
    track_para:
      regions:
        - 18:47340000-50370000
        - 18:61140000-63630000
        - 18:74030000-77560000
      scale_adjust: Mb
      intervals: 2
      tick_fontsize: 7
trackc cli ectopic_interactions3.yaml -s 4,1

image-12.png